Ligand clusters for UniProt code D0VWR2

Ligand clusters for D0VWR2: Photosystem II manganese-stabilizing polypeptide from Thermosynechococcus vulcanus

		Top 6 (of 22) ligand clusters Cluster 1. 5 ligand types 31 ligands Cluster 2. 1 ligand type 20 ligands Cluster 3. 2 ligand types 4 ligands Cluster 4. 2 ligand types 3 ligands Cluster 5. 2 ligand types 17 ligands Cluster 6. 2 ligand types 3 ligands
Representative protein: 5v2cO

Structures

PDB		Schematic diagram
5v2cO
3wu2O
4il6O
7d1tO
4ub6O
		more ...

Cluster 1 contains 5 ligand types

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Ligand		Description
		1. Ligand: DMS × 3 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 4il6(O), 5b5e(O), 5b66(O).
		2. Ligand: GOL × 3 glycerin Glycerol PDB codes: 3wu2(O), 4ub6(O), 5v2c(O).
		3. Ligand: HTG × 21 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 3wu2(O), 4il6(O), 4ub6(O), 4ub8(O), 5b5e(O), 5b66(O), 5gth(O), 5gti(O), 5v2c(O), 5ws5(O), 5ws6(O), 6jlj(O), 6jlk(O), 6jll(O), 6jlm(O), 6jln(O), 6jlo(O), 6jlp(O), 7cji(O), 7cjj(O), 7cou(O).
		4. Ligand: LMT × 3 Dodecyl-Beta-D-Maltoside PDB codes: 5gti(O), 5ws5(O), 5ws6(O).
		5. Ligand: UNL × 1 Unknown ligand PDB code: 7d1t(O).

Cluster 2 contains 1 ligand type

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Ligand		Description
		1. Ligand: HTG × 20 Heptyl 1-Thio-Beta-D-Glucopyranoside PDB codes: 3wu2(O), 4ub6(O), 4ub8(O), 5b5e(O), 5b66(O), 5gth(O), 5gti(O), 5v2c(O), 5ws5(O), 5ws6(O), 6jlj(O), 6jlk(O), 6jll(O), 6jlm(O), 6jln(O), 6jlo(O), 6jlp(O), 7cji(O), 7cjj(O), 7cou(O).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: DMS × 3 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 4il6(O), 5b5e(O), 5b66(O).
		2. Ligand: PGE × 1 Triethylene glycol PDB code: 5v2c(O).

Cluster 4 contains 2 ligand types

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Ligand		Description
		1. Ligand: PGE × 2 Triethylene glycol PDB codes: 5v2c(O),
		2. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5v2c(O).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 15 glycerin Glycerol PDB codes: 3wu2(O), 4ub6(O), 4ub8(O), 5gti(O), 5v2c(O), 6jlj(O), 6jlk(O), 6jll(O), 6jlm(O), 6jln(O), 6jlo(O), 6jlp(O), 7cji(O), 7cjj(O), 7cou(O).
		2. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5b5e(O), 5b66(O).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: DMS × 2 dimethyl sulfoxide Dimethyl sulfoxide PDB codes: 5b5e(O), 5b66(O).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 5v2c(O).