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EBI
Databases
Structure Databases
PDBsum
Ligand clusters for UniProt code B7GNN8
Ligand clusters for B7GNN8: Alpha-1,3/4-fucosidase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) GN=BLIJ_2413 PE=1 SV=1
3 ligand clusters
Cluster 1.
4 ligand types
4 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
2 ligands
Representative protein: 3uesA
Structures
PDB
Schematic diagram
3ues
A
3uet
A
3mo4
A
Cluster 1 contains 4 ligand types
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Ligand
Description
1. Ligand:
TYR × 1
l-tyrosine
PDB code:
3mo4
(A).
2. Ligand:
DFU × 1
(2s,3r,4s,5r)-2-Methylpiperidine-3,4,5-Triol
PDB code:
3ues
(A).
3. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3ues
(A).
4. Ligand:
FUC-NAG-GAL × 1
FUC
=Alpha-L-Fucose,
NAG
=N-Acetyl-D-Glucosamine,
GAL
=Beta-D-Galactose.
PDB code:
3uet
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
3uet
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
_Na
1. Metal:
_NA × 2
PDB codes:
3ues
(A),
3uet
(A).