Ligand clusters for UniProt code B3TMQ9

Ligand clusters for B3TMQ9: Sugar 3-C-methyl transferase from Actinomadura kijaniata

		Top 6 (of 7) ligand clusters Cluster 1. 3 ligand types 6 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 1 ligand type 1 ligand Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 3 ligands Cluster 6. 1 ligand type 1 ligand
Representative protein: 5t64A

Structures

PDB		Schematic diagram
5t64A
5t6bA
5t67A

Cluster 1 contains 3 ligand types

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Ligand		Description
		1. Ligand: SAH × 3 S-Adenosyl-L-Homocysteine PDB codes: 5t64(A), 5t67(A), 5t6b(A).
		2. Ligand: TMP × 2 Thymidine-5'-Phosphate PDB codes: 5t64(A), 5t6b(A).
		3. Ligand: JHZ × 1 (2r,4s,6r)-4-Amino-4,6-Dimethyl-5-Oxotetrahydro-2h- Pyran-2-Yl [(2r,3s,5r)-3-Hydroxy-5-(5-Methyl- 2,4- Dioxo-3,4-Dihydropyrimidin-1(2h)-Yl)tetrahydrofuran-2- Yl]methyl dihydrogen diphosphate (non- Preferred name) PDB code: 5t67(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5t67(A).
		2. Ligand: MES × 1 2-(N-Morpholino)-Ethanesulfonic acid PDB code: 5t6b(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5t67(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: EDO × 1 1,2-Ethanediol PDB code: 5t67(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
_Zn		1. Metal: _ZN × 3 PDB codes: 5t64(A), 5t67(A), 5t6b(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
_Mg		1. Metal: _MG × 1 PDB code: 5t64(A).