Ligand clusters for UniProt code B2RID1

Ligand clusters for B2RID1: Asp/Glu-specific dipeptidyl-peptidase from Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561)

		6 ligand clusters Cluster 1. 4 ligand types 6 ligands Cluster 2. 2 ligand types 2 ligands Cluster 3. 1 ligand type 4 ligands Cluster 4. 1 ligand type 3 ligands Cluster 5. 1 ligand type 1 ligand Cluster 6. 1 ligand type 1 ligand
Representative protein: 4xzyA

Structures

PDB		Schematic diagram
4xzyA
4y01A
6jtbA
4y04A
4y02A
		more ...

Cluster 1 contains 4 ligand types

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Ligand		Description
		1. Ligand: CIT × 2 citric acid Citric acid PDB codes: 6jtb(A),
__K		2. Metal: __K × 2 PDB codes: 6jtb(A),
		3. Ligand: C8O × 1 2-(2-Azanylethylamino)-5-Nitro-Benzoic acid PDB code: 6jtc(A).
		4. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 6jtb(A).

Cluster 2 contains 2 ligand types

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Ligand		Description
		1. Ligand: CIT × 1 citric acid Citric acid PDB code: 6jtb(A).
		2. Ligand: GOL × 1 glycerin Glycerol PDB code: 6jtb(A).

Cluster 3 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 4 glycerin Glycerol PDB codes: 4xzy(A), 4y01(A), 6jtb(A), 6jtc(A).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 4y02(A), 4y04(A), 6jtb(A).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 4y02(A).

Cluster 6 contains 1 ligand type

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 6jtb(A).