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Ligand clusters for UniProt code B0R5M0
Ligand clusters for B0R5M0: Dodecin OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) OX=478009 GN=OE_3073R PE=1 SV=1
5 ligand clusters
Cluster 1.
4 ligand types
10 ligands
Cluster 2.
1 ligand type
10 ligands
Cluster 3.
2 ligand types
11 ligands
Cluster 4.
1 ligand type
11 ligands
Cluster 5.
1 ligand type
1 ligand
Representative protein: 2cc6A
Structures
PDB
Schematic diagram
2cc6
A
4b2j
A
2cc8
A
2vx9
A
4b2m
A
more ...
Cluster 1 contains 4 ligand types
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Ligand
Description
1. Ligand:
RBF × 6
riboflavin
Riboflavin
PDB codes:
2cc8
(A),
2ccb
(A),
2vx9
(A),
4b2j
(A),
4b2k
(A),
4b2m
(A).
2. Ligand:
LUM × 2
Lumichrome
PDB codes:
2cc6
(A),
2cc7
(A).
3. Ligand:
C3F × 1
3-[7,8-Dimethyl-2,4-Bis(oxidanylidene)benzo[g]pteridin- 10-Yl]propylcarbamic acid
PDB code:
4b2h
(A).
4. Ligand:
LFN × 1
Lumiflavin
PDB code:
2ccc
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 10
Sulfate ion
PDB codes:
2cc6
(A),
2cc7
(A),
2cc8
(A),
2cc9
(A),
2ccb
(A),
2ccc
(A),
4b2h
(A),
4b2j
(A),
4b2k
(A),
4b2m
(A).
Cluster 3 contains 2 ligand types
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Ligand
Description
_Mg
1. Metal:
_MG × 10
PDB codes:
2cc6
(A),
2cc7
(A),
2cc8
(A),
2cc9
(A),
2ccb
(A),
2ccc
(A),
4b2h
(A),
4b2j
(A),
4b2k
(A),
4b2m
(A).
_Na
2. Metal:
_NA × 1
PDB code:
2vx9
(A).
Cluster 4 contains 1 ligand type
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Ligand
Description
_Cl
1. Metal:
_CL × 11
PDB codes:
2cc6
(A),
2cc7
(A),
2cc8
(A),
2cc9
(A),
2ccb
(A),
2ccc
(A),
2vx9
(A),
4b2h
(A),
4b2j
(A),
4b2k
(A),
4b2m
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
_Na
1. Metal:
_NA × 1
PDB code:
2vx9
(A).