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Ligand clusters for UniProt code B0R5M0

Ligand clusters for B0R5M0: Dodecin OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) OX=478009 GN=OE_3073R PE=1 SV=1

5 ligand clusters
Cluster 1.
4 ligand types
10 ligands
Cluster 2.
1 ligand type
10 ligands
Cluster 3.
2 ligand types
11 ligands
Cluster 4.
1 ligand type
11 ligands
Cluster 5.
1 ligand type
1 ligand
Representative protein: 2cc6A  
JSmol
 

Structures

PDB   Schematic diagram
2cc6A    
4b2jA    
2cc8A    
2vx9A    
4b2mA    
 more ...

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: RBF × 6
riboflavin
Riboflavin
PDB codes: 2cc8(A), 2ccb(A), 2vx9(A), 4b2j(A), 4b2k(A), 4b2m(A).


 
2. Ligand: LUM × 2
Lumichrome
PDB codes: 2cc6(A), 2cc7(A).


 
3. Ligand: C3F × 1
3-[7,8-Dimethyl-2,4-Bis(oxidanylidene)benzo[g]pteridin- 10-Yl]propylcarbamic acid
PDB code: 4b2h(A).


 
4. Ligand: LFN × 1
Lumiflavin
PDB code: 2ccc(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 10
Sulfate ion
PDB codes: 2cc6(A), 2cc7(A), 2cc8(A), 2cc9(A), 2ccb(A), 2ccc(A), 4b2h(A), 4b2j(A), 4b2k(A), 4b2m(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description

_Mg
 
1. Metal: _MG × 10
PDB codes: 2cc6(A), 2cc7(A), 2cc8(A), 2cc9(A), 2ccb(A), 2ccc(A), 4b2h(A), 4b2j(A), 4b2k(A), 4b2m(A).

_Na
 
2. Metal: _NA × 1
PDB code: 2vx9(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description

_Cl
 
1. Metal: _CL × 11
PDB codes: 2cc6(A), 2cc7(A), 2cc8(A), 2cc9(A), 2ccb(A), 2ccc(A), 2vx9(A), 4b2h(A), 4b2j(A), 4b2k(A), 4b2m(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

_Na
 
1. Metal: _NA × 1
PDB code: 2vx9(A).

 

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