Ligand clusters for UniProt code A2NHM3

Ligand clusters for A2NHM3: If kappa light chain (Fragment) from Mus musculus

		Top 6 (of 20) ligand clusters Cluster 1. 26 ligand types 38 ligands Cluster 2. 3 ligand types 4 ligands Cluster 3. 2 ligand types 4 ligands Cluster 4. 1 ligand type 1 ligand Cluster 5. 1 ligand type 1 ligand Cluster 6. 3 ligand types 3 ligands
Representative protein: 1lo0X

Structures

PDB		Schematic diagram
1lo0X
1mpaL
1zeaL
3v52L
3uo1L
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Cluster 1 contains 26 ligand types (of which only 20 are listed. Click for all)

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Ligand		Description
		1. Ligand: CIT × 2 citric acid Citric acid PDB codes: 1zea(L),
		2. Ligand: IPA × 1 isopropyl alcohol Isopropyl alcohol PDB code: 3we6(B).
		3. Ligand: TRS × 1 tromethamine 2-Amino-2-Hydroxymethyl-Propane-1,3-Diol PDB code: 4tpr(L).
		4. Ligand: ALA-GLU-PHE-ARG-HIS-ASP-SER × 4 PDB codes: 2ipu(L), 2r0w(L), 3bae(L), 3bkj(L).
		5. Ligand: GLU-PRO-GLN-ALA-PRO-TRP-MET-GLU × 3 PDB codes: 3uyr(L), 3v4u(L), 3v52(L).
_Cd		6. Metal: _CD × 3 PDB codes: 1mnu(L), 1mpa(L), 2mpa(L).
		7. Ligand: CPD × 2 [1-(3-Dimethylamino-Propyl)-3-Ethyl-Ureido]-[4-(2,2,2- Trifluoro-Acetylamino)- Benzyl]phosphinic acid-2-(2,2- Dihydro-Acetylamino)-3-Hydroxy-1-(4-Nitrophenyl)- Propyl ester PDB codes: 2dqt(L), 2dqu(L).
		8. Ligand: EDO × 2 1,2-Ethanediol PDB codes: 3uyr(L), 3v52(L).
		9. Ligand: SO4 × 2 Sulfate ion PDB codes: 2a1w(L), 3bqu(C).
		10. Ligand: THC-LYS-ASP-THR-ASN-ASN-ASN-LEU-CYF × 2 THC=N-Methylcarbonylthreonine, CYF=5-[2-(2-Amino-2-Carbamoyl-Ethylsulfanyl)-Acetylamino]- 2-(3,6-Dihydroxy-9,9a-Dihydro-3h-Xanthen-9- Yl)- Benzoic acid. PDB codes: 1mpa(L), 2mpa(L).
		11. Ligand: ALA-GLY-THR-TYR-GLY-LEU-GLY-ASP × 1 PDB code: 6pxr(L).
		12. Ligand: ALA-LYS-PHE-ARG-HIS-ASP × 1 PDB code: 2r0z(L).
		13. Ligand: ASN-THR-GLY-TRP-LEU-ALA-GLY-LEU-PHE × 1 PDB code: 4q0x(L).
		14. Ligand: BC1 × 1 3-{[(9-Cyano-9,10-Dihydro-10-Methylacridin-9-Yl) carbonyl]amino}propanoic acid PDB code: 1lo0(X).
		15. Ligand: DVA-DPR-GLY-DSN-DGN-DHI-DTY-DAS-DSN × 1 DVA=D-Valine, DPR=D-Proline, DSN=D-Serine, DGN=D-Glutamine, DHI=D-Histidine, DTY=D-Tyrosine, DAS=D-Aspartic acid. PDB code: 1zea(L).
		16. Ligand: GLU-PHE-ARG-HIS-GLU-ALA × 1 PDB code: 3eyu(L).
		17. Ligand: GLU-PRO-GLN-ALA-PRO-TRP-MET-GLU-GLN × 1 PDB code: 3uo1(L).
		18. Ligand: MAG-RAE-RAM × 1 MAG=Methyl 2-Acetamido-2-Deoxy-Beta-D-Glucopyranoside, RAE=Alpha-L-Olivopyranose, RAM=Alpha-L-Rhamnopyranose. PDB code: 1m7d(A).
		19. Ligand: MET-ASP-TRP-ASN-MET-HIS-ALA-ALA × 1 PDB code: 1pz5(A).
		20. Ligand: MT1 × 1 N-(4-{[(2,4-Diaminopteridin-1-Ium-6-Yl)methyl](methyl) amino}benzoyl)-L-Glutamic acid PDB code: 4ocx(L).
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Cluster 2 contains 3 ligand types

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Ligand		Description
		1. Ligand: PG4 × 2 Tetraethylene glycol PDB codes: 4tpr(L),
		2. Ligand: SO4 × 1 Sulfate ion PDB code: 4tqe(L).
_Na		3. Metal: _NA × 1 PDB code: 4tqe(L).

Cluster 3 contains 2 ligand types

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Ligand		Description
		1. Ligand: GOL × 3 glycerin Glycerol PDB codes: 2ipu(L), 2iqa(L), 2r0z(L).
		2. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 4tpr(L).

Cluster 4 contains 1 ligand type

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Ligand		Description
		1. Ligand: PGE × 1 Triethylene glycol PDB code: 4tpr(L).

Cluster 5 contains 1 ligand type

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Ligand		Description
		1. Ligand: PGE × 1 Triethylene glycol PDB code: 4tqe(L).

Cluster 6 contains 3 ligand types

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Ligand		Description
		1. Ligand: GOL × 1 glycerin Glycerol PDB code: 1t2q(L).
_Cd		2. Metal: _CD × 1 PDB code: 1mnu(L).
_Na		3. Metal: _NA × 1 PDB code: 3bkm(L).