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Ligand clusters for UniProt code A0A0H3AIG7

Ligand clusters for A0A0H3AIG7: Actin cross-linking toxin VgrG1 from Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)

Top 6 (of 11) ligand clusters
Cluster 1.
6 ligand types
22 ligands
Cluster 2.
2 ligand types
6 ligands
Cluster 3.
1 ligand type
6 ligands
Cluster 4.
1 ligand type
6 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
1 ligand
Representative protein: 4dtdA  
JSmol
 

Structures

PDB   Schematic diagram
4dtdA    
4dtfA    
4e1cA    
4e1fA    
4dthA    
 more ...

 

 Cluster 1 contains 6 ligand types

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Ligand Description

_Mg
 
1. Metal: _MG × 6
PDB codes: 4dtf(A), 4dth(A), 4e1c(A),

_Mn
 
2. Metal: _MN × 4
PDB codes: 4dtl(A), 4e1d(A),


 
3. Ligand: SO4 × 6
Sulfate ion
PDB codes: 4dtf(A), 4dth(A), 4dtl(A), 4e1c(A), 4e1d(A), 4e1f(A).


 
4. Ligand: ADP × 3
Adenosine-5'-Diphosphate
PDB codes: 4e1c(A), 4e1d(A), 4e1f(A).


 
5. Ligand: ATP × 2
Adenosine-5'-Triphosphate
PDB codes: 4dth(A), 4dtl(A).


 
6. Ligand: ANP × 1
Phosphoaminophosphonic acid-Adenylate ester
PDB code: 4dtf(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 5
glycerin
Glycerol
PDB codes: 4dtd(A), 4dtf(A), 4dth(A), 4dtl(A), 4e1c(A).


 
2. Ligand: SO4 × 1
Sulfate ion
PDB code: 4e1f(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 6
Sulfate ion
PDB codes: 4dtf(A), 4dth(A), 4dtl(A), 4e1c(A), 4e1d(A), 4e1f(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 6
Sulfate ion
PDB codes: 4dtf(A), 4dth(A), 4dtl(A), 4e1c(A), 4e1d(A), 4e1f(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 4dtf(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 4dth(A).

 

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