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PDBsum entry 5k1v
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Ligand/metal interactions
PDB id
5k1v
12 instances of ligand highlighted
NAG
Ligands
NAG-NAG
×2
NAG 1(C) to NAG 2(C)
NAG 1(D) to NAG 2(D)
NAG-NAG-MAN-MAN
NAG 1(E) to MAN 4(E)
6PX
6PX 1002(A)
NAG
×12
NAG 1007(A)
NAG 1008(A)
NAG 1009(A)
NAG 1010(A)
NAG 1011(A)
NAG 1012(A)
NAG 1002(B)
NAG 1007(B)
NAG 1008(B)
NAG 1009(B)
NAG 1010(B)
NAG 1011(B)
Metals
_ZN
×2
ZN 1001(A)
ZN 1001(B)
Ligand
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1011(A)
15
15
1
1
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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of interactions involving ligand NAG
List of
interactions
NAG 1011(A)
_ZN
×2
