PDBsum entry 5k1v Go to PDB code:  Pore analysis for: 5k1v calculated with MOLE 2.0 PDB id 5k1v Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   27 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 1.52 31.5 -0.91 -0.32 14.6 83 2 2 2 3 2 1 0   2 1.14 2.19 40.4 -0.68 -0.06 18.1 83 6 4 1 7 1 1 0  NAG 1007 A 3 1.15 3.00 50.2 -0.80 -0.27 23.3 89 2 4 2 6 0 0 0   4 1.13 1.22 53.9 -0.51 -0.18 16.2 82 5 3 5 8 3 0 1   5 1.62 1.80 54.0 -1.19 -0.36 11.2 76 3 3 6 3 4 2 0   6 1.64 1.81 56.1 -0.92 -0.25 15.1 81 4 5 7 7 3 2 1   7 1.13 1.22 63.1 -1.07 -0.01 17.2 81 9 2 7 6 4 0 0   8 1.65 1.65 66.7 -1.37 -0.38 16.2 82 6 4 10 4 6 0 1   9 1.64 1.86 88.1 -1.24 -0.19 16.1 77 7 10 5 7 6 3 0  6PX 1002 A 10 1.30 1.39 90.8 -1.71 -0.32 19.1 84 10 4 7 7 2 0 0   11 1.65 1.86 97.2 -1.91 -0.21 20.6 75 11 7 7 3 9 2 0   12 1.84 1.83 97.0 -1.56 -0.24 20.6 79 9 9 8 7 8 1 1  6PX 1002 A 13 1.61 1.73 97.4 -1.45 -0.27 16.5 79 8 8 8 3 8 1 0  6PX 1002 A 14 1.64 3.37 105.8 -2.69 -0.45 27.3 80 17 5 9 3 4 1 0   15 1.43 1.68 116.6 -2.27 -0.32 25.8 78 12 9 8 6 5 3 0  NAG 1009 B 16 1.34 1.60 121.3 -1.55 -0.17 19.4 77 8 12 7 9 9 3 0  NAG 1009 B 17 1.34 1.59 130.5 -2.12 -0.33 24.6 81 14 10 9 9 4 2 0  NAG 1009 B 18 1.23 1.37 156.0 -2.03 -0.29 20.3 83 20 5 15 9 6 1 0   19 1.27 1.36 175.7 -1.70 -0.29 18.0 83 17 9 15 14 6 3 0  NAG 1009 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.