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PDBsum entry 6mdt
Go to PDB code:
Ligand/metal interactions
PDB id
6mdt
4 instances of ligand highlighted
NAG-NAG-BMA
Ligands
NAG-NAG-BMA-MAN-
MAN
×4
NAG 1(A) to MAN 5(A)
NAG 1(I) to MAN 5(I)
NAG 1(K) to MAN 5(K)
NAG 1(Q) to MAN 5(Q)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN
NAG 1(C) to MAN 7(C)
NAG-NAG
NAG 1(F) to NAG 2(F)
NAG-NAG-BMA
×4
NAG 1(J) to BMA 3(J)
NAG 1(M) to BMA 3(M)
NAG 1(O) to BMA 3(O)
NAG 1(S) to BMA 3(S)
NAG-NAG-BMA-MAN
×3
NAG 1(N) to MAN 4(N)
NAG 1(P) to MAN 4(P)
NAG 1(R) to MAN 4(R)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN-
MAN
NAG 1(T) to MAN 9(T)
NAG
×9
NAG 701(B)
NAG 702(B)
NAG 703(B)
NAG 601(G)
NAG 602(G)
NAG 603(G)
NAG 604(G)
NAG 605(G)
NAG 606(G)
Ligand
NAG-NAG-BMA
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(J)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(J)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(J)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA
List of
interactions
NAG 1(J) to BMA 3(J)
