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PDBsum entry 1v55
Go to PDB code:
Ligand/metal interactions
PDB id
1v55
8 instances of ligand highlighted
PGV
Ligands
HEA
×4
HEA 515(A)
HEA 516(A)
TGL
×6
TGL 3521(A)
TGL 3522(A)
TGL 3523(A)
PGV
×8
PGV 3266(A)
PGV 3524(A)
PGV 3267(C)
PGV 3268(C)
CUA
×2
CUA 228(B)
CHD
×8
CHD 4085(B)
CHD 3525(C)
CHD 3271(C)
CHD 3060(J)
CDL
×4
CDL 3270(C)
CDL 3269(G)
PEK
×6
PEK 3264(C)
PEK 3265(C)
PEK 4263(G)
UNX
×2
UNX 3262(C)
PSC
×2
PSC 3230(E)
DMU
×2
DMU 3526(M)
Metals
_ZN
×2
ZN 99(F)
_CU
×2
CU 517(A)
_MG
×2
MG 3518(A)
_NA
×2
NA 3519(A)
Ligand
PGV
-
(1r)-2-{[{[(2s)-2,3-
Dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-
[(Palmitoyloxy)methyl]ethyl (11e)- Octadec-11-Enoate
[Phosphatidylglycerol; 2-Vaccenoyl-1-Palmitoyl-Sn- Glycerol-
3-Phosphoglycerol]
Formula:
C
40
H
77
O
10
P
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
PGV 3524(A)
51
51
0
0
0
0
0
1
0
0
Advanced Analysis
Residue
Name Mismatches
Count
PGV 3524(A)
O14: O13
|
O13: O14
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand PGV
List of
interactions
PGV 3524(A)
(also representing equivalent ligand PGV 4524(N) )
_ZN
×2
_CU
×2
_MG
×2
