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PDBsum entry 5k5e
Go to PDB code:
Ligand/metal interactions
PDB id
5k5e
10 instances of ligand highlighted
NAG
Ligands
NAG-NAG
×3
NAG 1(C) to NAG 2(C)
NAG 1(D) to NAG 2(D)
NAG 1(E) to NAG 2(E)
NAG
×10
NAG 601(A)
NAG 602(A)
NAG 605(A)
NAG 606(A)
NAG 603(B)
NAG 605(B)
NAG 608(B)
6QS
×2
6QS 609(A)
EDO
×3
EDO 610(A)
EDO 610(B)
EDO 611(B)
GOL
×2
GOL 612(B)
GOL 613(B)
Ligand
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 601(A)
15
15
1
1
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG
List of
interactions
NAG 601(A)
(also representing equivalent ligand NAG 601(B) )
