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PDBsum entry 2fdv
Go to PDB code:
Ligand/metal interactions
PDB id
2fdv
4 instances of ligand highlighted
HEM-D2G
Ligands
SO4
×5
SO4 2502(A)
SO4 2503(A)
SO4 2504(A)
HEM-D2G
×4
HEM 500(A) to D2G 501(A)
EDO
×7
EDO 2003(A)
EDO 2001(C)
EDO 2002(C)
EDO 2004(C)
EDO 2005(C)
EDO 2006(C)
EDO 2007(D)
Ligand
HEM-D2G
HEM
-
Protoporphyrin IX containing fe [Heme]
Formula:
C
34
H
32
FeN
4
O
4
D2G
-
N-Methyl(5-(Pyridin-3-Yl)furan-2-Yl)methanamine
Formula:
C
11
H
2
N
2
O
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
HEM 500(A)
43
43
0
0
Complete
Chiral checks - OK
D2G 501(A)
14
14
0
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand HEM-D2G
List of
interactions
HEM 500(A) to D2G 501(A)
also representing 3 other equivalent ligands:
HEM 500(B) to D2G 501(B)
HEM 500(C) to D2G 501(C)
HEM 500(D) to D2G 501(D)
