PDBsum entry 2fdv

Pore analysis for: 2fdv calculated with

MOLE 2.0

PDB id

2fdv

Pores calculated on whole structure

Pores calculated excluding ligands

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14 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

3.15

3.33

30.2

-2.83

-0.46

26.4

78

5

2

5

1

2

0

0

2

4.32

4.66

30.4

-2.71

-0.56

29.1

72

7

3

1

0

2

1

0

3

4.31

5.84

39.2

-2.52

-0.31

28.9

73

7

3

2

0

3

0

0

4

2.42

5.31

43.1

-2.63

-0.51

24.7

78

7

2

6

3

1

0

0

5

2.50

2.59

43.6

-1.54

-0.54

15.3

84

4

4

6

0

4

0

0

6

1.44

1.52

49.8

0.81

0.34

6.7

77

4

1

4

13

7

1

0

SO4 2504 A

7

1.48

1.57

69.4

0.65

0.29

8.9

77

5

3

6

14

8

1

0

SO4 2504 A

8

1.33

1.51

91.2

-1.14

-0.21

22.6

74

15

6

1

8

5

0

1

HEM 500 D

9

2.50

2.52

99.1

-2.73

-0.55

27.7

78

14

4

4

1

2

2

0

SO4 2506 B

10

2.55

3.12

113.5

-0.18

0.27

13.1

71

9

1

4

10

8

4

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.