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PDBsum entry 7pc2
Go to PDB code:
Ligand/metal interactions
PDB id
7pc2
19 instances of ligand highlighted
NAG-NAG
Ligands
NAG-NAG
×19
NAG 1(S) to NAG 2(S)
NAG 1(T) to NAG 2(T)
NAG 1(U) to NAG 2(U)
NAG 1(V) to NAG 2(V)
NAG 1(Z) to NAG 2(Z)
NAG 1(d) to NAG 2(d)
NAG 1(7) to NAG 2(7)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN-
MAN
×3
NAG 1(W) to MAN 9(W)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN
×5
NAG 1(X) to MAN 8(X)
NAG 1(q) to MAN 8(q)
NAG-NAG-BMA
×10
NAG 1(Y) to BMA 3(Y)
NAG 1(c) to BMA 3(c)
NAG 1(f) to BMA 3(f)
NAG 1(u) to BMA 3(u)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN-
MAN-MAN-MAN
×3
NAG 1(a) to MAN 11(a)
NAG 1(6) to MAN 11(6)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN
NAG 1(b) to MAN 7(b)
NAG-NAG-BMA-MAN-
MAN
×3
NAG 1(e) to MAN 5(e)
NAG
×20
NAG 601(A)
NAG 602(A)
NAG 603(A)
NAG 604(A)
NAG 605(A)
NAG 601(C)
NAG 604(C)
NAG 701(D)
NAG 702(D)
Ligand
NAG-NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(S)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(S)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG
List of
interactions
NAG 1(S) to NAG 2(S)
(also representing equivalent ligand NAG 1(g) to NAG 2(g) )
