spacer
spacer

PDBsum entry 6v8d
Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) links
Ligand/metal interactions PDB id
6v8d
3 instances of ligand highlighted
PLP-O78
Ligands
PLP-O78 ×3
PLP 501(A) to O78 502(A)
  
Ligand PLP-O78

PLP - Pyridoxal-5'-Phosphate [Vitamin b6 phosphate] Formula: C8H10NO6P
O78 - (3z)-3-Iminocyclohex-1-Ene-1-Carboxylic acid Formula: C7H9NO2
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
PLP 501(A) 16 16 1 1 Complete Chiral checks - OK
O78 502(A) 10 10 0 0 Complete Chiral checks - OK
Advanced Analysis
Residue Name Mismatches Count
PLP 501(A) O3P: O1P|O1P: O3P 2
O78 502(A) - 0
Additional Information
Use mouse to move/zoom
3D Viewers:
3Dmol.js
 
  JSmol
 

Het Group PLP matches this enzyme's cofactor pyridoxal 5'-phosphate with similarity 93.75%


LIGPLOT of interactions involving ligand PLP-O78

JSmol




List of
interactions
 

PLP 501(A) to O78 502(A)

also representing 2 other equivalent ligands:
PLP 501(B) to O78 502(B)
PLP 501(C) to O78 502(C)
  
spacer
spacer