PDBsum entry 6v8d Go to PDB code:  Pore analysis for: 6v8d calculated with MOLE 2.0 PDB id 6v8d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 5.37 6.38 29.0 -1.35 -0.29 27.5 90 3 6 2 6 0 0 0   2 1.14 1.14 40.7 -1.61 -0.29 16.6 75 5 3 2 1 5 1 0  O78 502 B 3 2.46 4.79 40.7 -2.10 -0.55 26.5 79 5 4 0 1 2 0 0  PLP 501 C O78 502 C 4 2.16 2.54 48.6 -0.42 -0.21 13.5 88 4 5 2 8 0 3 0   5 2.16 2.55 52.3 -0.39 -0.21 13.1 87 5 5 2 9 0 3 0   6 2.46 4.79 61.3 -1.69 -0.40 25.9 84 8 9 2 5 2 1 0  PLP 501 C O78 502 C 7 1.21 2.28 79.3 -0.93 -0.39 15.7 81 5 9 2 5 6 0 0  O78 502 A O78 502 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.