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PDBsum entry 6t5f
Go to PDB code:
Ligand/metal interactions
PDB id
6t5f
Ligand highlighted
LEU-ARG-ARG-GLY-
SEP-THR-CYS-VAL-
LEU-ALA
Ligands
LEU-ARG-ARG-GLY-
SEP-THR-CYS-VAL-
LEU-ALA
LEU 236(E) to ALA 245(E)
LEU-ARG-ARG-GLY-
SEP-THR-CYS
LEU 236(G) to CYS 242(G)
GLY-SER-LEU-ARG-
ARG-GLY-SEP-THR-
CYS
GLY 234(H) to CYS 242(H)
Ligand
LEU-ARG-ARG-GLY-SEP-THR-CYS-VAL-LEU-ALA
-
Phosphoserine
[Phosphonoserine]
Formula:
C
3
H
8
NO
6
P
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LEU 236(E)
9
9
1
1
Complete
Chiral checks - OK
ARG 237(E)
12
12
1
1
Complete
Chiral checks - OK
ARG 238(E)
12
12
1
1
Complete
Chiral checks - OK
GLY 239(E)
5
-
-
-
Residue too small to validate
SEP 240(E)
11
11
1
1
Complete
Chiral checks - OK
THR 241(E)
8
8
1
1
Complete
Chiral checks - OK
CYS 242(E)
7
7
1
1
Complete
Chiral checks - OK
VAL 243(E)
8
8
1
1
Complete
Chiral checks - OK
LEU 244(E)
9
9
1
1
Complete
Chiral checks - OK
ALA 245(E)
6
-
-
-
Residue too small to validate
Advanced Analysis
Residue
Name Mismatches
Count
LEU 236(E)
O: OXT
1
ARG 237(E)
-
0
ARG 238(E)
-
0
GLY 239(E)
-
0
SEP 240(E)
-
0
THR 241(E)
O: OXT
1
CYS 242(E)
O: OXT
1
VAL 243(E)
O: OXT
1
LEU 244(E)
O: OXT
1
ALA 245(E)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand LEU-ARG-ARG-GLY-SEP-THR-CYS-VAL-LEU-ALA
List of
interactions
LEU 236(E) to ALA 245(E)
