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PDBsum entry 5w1v
Go to PDB code:
Ligand/metal interactions
PDB id
5w1v
4 instances of ligand highlighted
VAL-MET-ALA-PRO-
ARG-THR-LEU-ILE-
LEU
Ligands
VAL-MET-ALA-PRO-
ARG-THR-LEU-ILE-
LEU
×4
VAL 1(C) to LEU 9(C)
Ligand
VAL-MET-ALA-PRO-ARG-THR-LEU-ILE-LEU
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
VAL 1(C)
8
8
1
1
Complete
Chiral checks - OK
MET 2(C)
9
9
1
1
Complete
Chiral checks - OK
ALA 3(C)
6
-
-
-
Residue too small to validate
PRO 4(C)
8
8
1
1
Complete
Chiral checks - OK
ARG 5(C)
12
12
1
1
Complete
Chiral checks - OK
THR 6(C)
8
8
1
1
Complete
Chiral checks - OK
LEU 7(C)
9
9
1
1
Complete
Chiral checks - OK
ILE 8(C)
9
9
1
1
Complete
Chiral checks - OK
LEU 9(C)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
VAL 1(C)
-
0
MET 2(C)
O: OXT
1
ALA 3(C)
-
0
PRO 4(C)
-
0
ARG 5(C)
-
0
THR 6(C)
O: OXT
1
LEU 7(C)
O: OXT
1
ILE 8(C)
-
0
LEU 9(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand VAL-MET-ALA-PRO-ARG-THR-LEU-ILE-LEU
List of
interactions
VAL 1(C) to LEU 9(C)
also representing 3 other equivalent ligands:
VAL 1(H) to LEU 9(H)
VAL 1(M) to LEU 9(M)
VAL 1(R) to LEU 9(R)
