Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: inc/head.html
PDBsum entry 5nmf
Go to PDB code:
Ligand/metal interactions
PDB id
5nmf
2 instances of ligand highlighted
SER-LEU-TYR-ASN-
THR-ILE-ALA-THR-
LEU
Ligands
SER-LEU-TYR-ASN-
THR-ILE-ALA-THR-
LEU
×2
SER 1(C) to LEU 9(C)
EDO
×19
EDO 301(A)
EDO 301(D)
EDO 301(E)
EDO 302(E)
EDO 303(E)
EDO 302(F)
EDO 303(F)
EDO 304(F)
EDO 305(F)
EDO 306(F)
EDO 301(I)
EDO 302(I)
EDO 301(J)
EDO 305(J)
EDO 306(J)
GOL
×3
GOL 302(A)
GOL 302(D)
GOL 303(I)
SO4
×12
SO4 303(A)
SO4 304(A)
SO4 305(A)
SO4 306(A)
SO4 304(E)
SO4 305(E)
SO4 306(E)
SO4 307(E)
SO4 307(F)
SO4 307(J)
SO4 308(J)
Ligand
SER-LEU-TYR-ASN-THR-ILE-ALA-THR-LEU
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
SER 1(C)
7
6
0
0
1
0
-
-
-
-
LEU 2(C)
9
9
1
1
0
0
0
0
0
0
TYR 3(C)
13
13
1
1
0
0
0
0
0
0
ASN 4(C)
9
9
1
1
0
0
0
0
0
0
THR 5(C)
8
8
1
1
0
0
0
0
0
0
ILE 6(C)
9
9
1
1
0
0
0
0
0
0
ALA 7(C)
6
-
-
-
-
-
-
-
-
-
THR 8(C)
8
8
1
1
0
0
0
0
0
0
LEU 9(C)
9
9
0
0
0
0
0
0
0
0
Advanced Analysis
Residue
Name Mismatches
Count
SER 1(C)
CB: C
|
C: CB
|
O: OG
|
OG: OXT
4
LEU 2(C)
-
0
TYR 3(C)
-
0
ASN 4(C)
-
0
THR 5(C)
-
0
ILE 6(C)
-
0
ALA 7(C)
-
0
THR 8(C)
-
0
LEU 9(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
Use mouse to move/zoom
3D Viewers:
LIGPLOT
of interactions involving ligand SER-LEU-TYR-ASN-THR-ILE-ALA-THR-LEU
List of
interactions
SER 1(C) to LEU 9(C)
(also representing equivalent ligand SER 1(H) to LEU 9(H) )
