PDBsum entry 5nmf

Tunnel analysis for: 5nmf calculated with

MOLE 2.0

PDB id

5nmf

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

11 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.26

1.34

17.7

0.06

-0.14

15.7

84

2

2

1

4

0

0

0

2

1.26

1.35

20.2

0.17

-0.09

9.4

85

2

1

2

4

1

0

0

3

1.18

1.35

21.2

0.57

0.05

12.8

81

2

2

1

5

1

1

0

4

1.26

1.43

21.7

0.34

-0.06

10.8

81

2

1

1

4

1

0

0

5

1.20

1.34

25.2

0.76

0.12

8.8

79

2

1

1

5

2

1

0

6

1.25

1.34

31.5

0.30

-0.12

10.5

88

2

1

3

6

1

0

0

SO4 304 E

7

1.17

1.35

34.9

0.50

-0.06

9.4

84

2

1

3

7

2

1

0

SO4 304 E

8

1.44

2.26

22.8

-2.14

-0.33

28.3

73

2

2

0

3

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.