PDBsum entry 5mg0

Ligand/metal interactions

PDB id

5mg0


	Ligand highlighted
	LBV

Ligands

LBV

LBV 401(A)

EDO

EDO 405(A)

Metals

_NI

NI 402(A)

_CL ×2

CL 403(A)

CL 404(A)

Ligand LBV - 3-[2-[(Z)-[3-(2-Carboxyethyl)-5-[(Z)-(4-Ethenyl-3- Methyl-
5-Oxidanylidene-Pyrrol-2-Ylidene)methyl]-4- Methyl-Pyrrol-
1-Ium -2-Ylidene]methyl]-5-[(Z)-[(3e)-3- Ethylidene-4-
Methyl-5-Oxidanylidene-Pyrrolidin-2- Ylidene]methyl]-4-
Methyl-1h-Pyrrol-3- Yl]propanoic acid
[2(r),3(e)- Phytochromobilin]
Formula: C₃₃H₃₇N₄O₆

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
LBV 401(A)	43	43	0	0	Complete		Chiral checks - OK

Advanced Analysis

Residue	Name Mismatches	Count
LBV 401(A)	O2B: O1B\|O2C: O1C\|O1B: O2B\|O1C: O2C	4

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

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LIGPLOT of interactions involving ligand LBV

List of
interactions

LBV 401(A)