PDBsum entry 5dg3

Ligand/metal interactions

PDB id

5dg3


	4 instances of ligand highlighted
	U21

Ligands

U21 ×4

U21 301(B)

U21 301(C)

U21 301(E)

PO4

PO4 302(E)

Ligand U21 - Uridine-5'-Diphosphate-3-O-(R-3-Hydroxydecanoyl)-N- Acetyl-
D-Glucosamine
[(2r,3r,4r,5s,6r)-3-(Acetylamino)-2-{[(R)-{[(S)-
{[(2r, 3s,4r,5r)-5-(2,4-Dioxo-3,4-Dihydropyrimidin-1(2h)-
Yl)- 3,4-Dihydrox ytetrahydrofuran-2-
Yl]methoxy}(hydroxy) phosphoryl]oxy}(hydroxy)phosphoryl]
oxy}-5-Hydroxy-6- (Hydroxymethyl)tetrahydro-2h- Pyran-4-
Yl (3r)-3- Hydroxydecanoate]
Formula: C₂₇H₄₅N₃O₁₉P₂

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
U21 301(B)	51	51	0	0	0	0	0	1	0	0

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

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LIGPLOT of interactions involving ligand U21

List of
interactions

U21 301(B)

(also representing equivalent ligand U21 301(D) )