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PDBsum entry 4dm9
Go to PDB code:
Ligand/metal interactions
PDB id
4dm9
2 instances of ligand highlighted
PHQ-VAL-ALA-GME-
CF0
Ligands
PHQ-VAL-ALA-GME-
CF0
×2
PHQ 1(X) to CF0 5(X)
Ligand
PHQ-VAL-ALA-GME-CF0
PHQ
-
Benzyl chlorocarbonate
Formula:
C
8
H
7
ClO
2
GME
-
5-O-Methyl-Glutamic acid [(2s)-2-Amino-5-Methoxy-5-Oxopentanoic acid]
Formula:
C
6
H
11
NO
4
CF0
-
Fluoromethane [Fluoro methyl group]
Formula:
CH
3
F
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
PHQ 1(X)
11
11
1
1
Complete
Chiral checks - OK
VAL 2(X)
8
8
1
1
Complete
Chiral checks - OK
ALA 3(X)
6
-
-
-
Residue too small to validate
GME 4(X)
11
11
1
1
Complete
Chiral checks - OK
CF0 5(X)
2
-
-
-
Residue too small to validate
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand PHQ-VAL-ALA-GME-CF0
List of
interactions
PHQ 1(X) to CF0 5(X)
(also representing equivalent ligand PHQ 1(Y) to CF0 5(Y) )
