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PDBsum entry 3vdb
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Ligand/metal interactions
PDB id
3vdb
4 instances of ligand highlighted
149
Ligands
149
×4
149 2001(A)
DMS
×77
DMS 8001(A)
DMS 8002(A)
DMS 8003(A)
DMS 8004(A)
DMS 8005(A)
DMS 8006(A)
DMS 8007(A)
DMS 8008(A)
DMS 8009(A)
DMS 8010(A)
DMS 8011(A)
DMS 8012(A)
DMS 8013(A)
DMS 8014(A)
DMS 8015(A)
DMS 8016(A)
DMS 8017(A)
DMS 8018(A)
DMS 8006(B)
DMS 8013(B)
DMS 8014(B)
DMS 8015(B)
DMS 8019(B)
DMS 8021(B)
DMS 8022(B)
DMS 8007(C)
DMS 8013(C)
DMS 8015(C)
DMS 8018(C)
DMS 8019(C)
DMS 8020(C)
DMS 8012(D)
DMS 8015(D)
Metals
_MG
×9
MG 3001(A)
MG 3002(A)
MG 3007(B)
_NA
×14
NA 3101(A)
NA 3102(A)
NA 3103(A)
NA 3104(B)
NA 3104(D)
Ligand
149
-
D-Galactonolactone
[(3r,4s,5r,6r)-3,4,5-Trihydroxy-6-(Hydroxymethyl)oxan-2- One]
Formula:
C
6
H
10
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
149 2001(A)
12
12
0
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand 149
List of
interactions
149 2001(A)
also representing 3 other equivalent ligands:
149 2001(B)
149 2001(C)
149 2001(D)
_MG
×9
_NA
×14
