PDBsum entry 3vdb Go to PDB code:  Pore analysis for: 3vdb calculated with MOLE 2.0 PDB id 3vdb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   34 pores, coloured by radius 42 pores, coloured by radius 42 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.85 3.35 25.1 -2.24 -0.42 25.2 86 4 4 3 4 0 1 0   2 1.65 2.22 30.4 -0.72 -0.07 11.5 71 3 2 2 3 3 2 0  DMS 8004 C 3 2.48 2.99 30.6 -1.63 -0.33 22.4 82 4 4 4 3 1 1 1  DMS 8001 C 4 2.39 2.89 35.0 -2.54 -0.55 28.5 80 6 6 3 3 0 2 1  DMS 8014 C 5 2.65 4.63 44.1 -2.21 -0.59 23.3 91 6 5 5 4 0 1 0   6 2.65 4.64 45.4 -2.00 -0.59 19.6 89 5 4 5 4 0 2 0   7 2.25 2.69 54.7 -1.44 -0.28 20.2 81 10 3 7 4 4 1 0   8 1.11 1.17 56.9 -2.20 -0.65 22.4 90 5 7 4 5 0 1 0   9 1.11 1.17 58.2 -2.09 -0.66 20.0 88 4 6 4 5 0 2 0   10 1.16 1.25 59.5 -1.15 -0.19 12.9 82 7 2 6 7 2 2 2   11 2.21 2.67 59.9 -1.22 -0.26 17.0 82 11 4 6 5 4 1 0  DMS 8008 C 12 1.66 2.23 61.7 -1.77 -0.41 20.2 77 7 5 5 3 3 0 0  DMS 8004 C DMS 8007 D 13 4.16 6.00 62.4 -2.13 -0.53 23.5 78 9 6 5 4 4 1 0  DMS 8008 C 14 1.62 2.24 63.1 -1.43 -0.24 15.2 74 7 3 5 3 4 0 0  DMS 8008 C DMS 8004 D 15 4.08 4.08 63.7 -1.85 -0.47 20.7 80 8 5 6 4 4 0 0  DMS 8008 C 16 1.50 3.96 68.0 -0.95 -0.04 16.1 77 8 5 6 8 5 1 1   17 2.26 2.62 68.3 -1.12 -0.30 16.6 78 11 7 6 5 7 1 0  DMS 8008 C 18 2.19 2.50 69.1 -1.09 -0.30 16.8 79 10 8 6 6 6 1 0   19 2.18 2.53 69.5 -1.43 -0.40 18.4 78 12 9 6 6 6 2 0   20 2.19 2.33 72.0 -1.49 -0.28 19.3 81 12 5 8 8 4 3 0  DMS 8008 C 21 1.59 1.74 73.5 -2.56 -0.67 24.5 83 10 10 6 5 0 4 0  DMS 8001 C DMS 8014 C 22 1.11 1.17 81.1 -1.76 -0.44 20.5 81 13 7 8 9 4 3 0   23 1.17 1.22 191.1 -1.64 -0.45 19.5 82 13 12 11 12 1 10 2  DMS 8001 C DMS 8002 C DMS 8005 C DMS 8011 C DMS 8016 C DMS 8019 C 24 4.12 4.24 29.6 -2.61 -0.61 25.4 76 6 2 4 1 1 2 0  DMS 8006 A 25 1.68 2.27 30.0 -0.99 -0.12 10.5 63 4 1 2 2 4 2 0  DMS 8003 B 26 4.16 4.30 31.7 -2.53 -0.59 25.4 77 6 2 4 1 1 1 0  DMS 8007 B 27 2.53 4.47 43.9 -1.35 -0.41 17.3 86 4 4 2 6 0 2 0   28 3.97 4.22 59.5 -2.23 -0.62 24.6 80 8 7 5 3 2 1 0   29 3.99 4.22 60.1 -2.50 -0.66 26.0 77 9 8 6 3 3 2 0   30 4.06 4.06 60.2 -1.83 -0.45 20.2 80 7 5 6 4 4 0 0   31 4.17 4.30 60.8 -2.14 -0.52 22.4 77 8 6 7 4 5 1 0   32 2.19 2.73 65.1 -1.06 -0.21 16.2 80 10 5 8 5 4 2 0   33 2.18 2.78 70.6 -1.37 -0.29 17.2 77 12 6 10 5 5 4 0   34 2.23 2.56 72.6 -1.18 -0.27 16.4 81 10 5 8 8 4 2 0   35 2.19 2.73 77.8 -0.97 -0.23 15.3 78 10 9 7 7 6 2 0   36 2.25 2.57 77.4 -1.03 -0.25 15.6 78 9 8 7 10 7 2 0   37 1.37 3.85 40.6 -1.07 -0.07 15.9 79 6 3 4 5 4 0 0   38 2.42 2.92 41.6 -1.28 -0.21 19.9 79 5 5 3 5 2 2 1  DMS 8001 D 39 1.14 1.26 68.2 -1.09 -0.21 15.7 78 7 7 5 6 2 5 2  DMS 8001 D DMS 8005 D DMS 8013 D 40 1.59 1.77 81.5 -2.33 -0.66 23.4 83 11 11 6 6 0 4 0  DMS 8018 A DMS 8001 D 41 1.25 1.39 146.6 -1.90 -0.51 19.3 80 15 15 11 10 0 11 2  DMS 8004 A DMS 8011 A DMS 8018 A DMS 8001 D DMS 8005 D DMS 8013 D 42 1.14 3.19 25.8 -0.95 -0.04 9.8 69 3 0 4 2 2 1 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.