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PDBsum entry 3u3d
Go to PDB code:
Ligand/metal interactions
PDB id
3u3d
Ligand highlighted
THR-ALA-ARG-MYK-
SER-THR-GLY
Ligands
THR-ALA-ARG-MYK-
SER-THR-GLY
THR 6(B) to GLY 12(B)
GOL
GOL 274(A)
Metals
_ZN
ZN 275(A)
Ligand
THR-ALA-ARG-MYK-SER-THR-GLY
-
N~6~-Tetradecanoyl-L-Lysine
[N6-Myristoyl lysine]
Formula:
C
20
H
40
N
2
O
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
THR 6(B)
8
8
1
1
0
0
0
0
0
0
ALA 7(B)
6
-
-
-
-
-
-
-
-
-
ARG 8(B)
12
12
1
1
0
0
0
0
0
0
MYK 9(B)
25
25
1
1
0
0
0
0
0
0
SER 10(B)
7
6
0
0
1
0
-
-
-
-
THR 11(B)
8
8
1
1
0
0
0
0
0
0
GLY 12(B)
5
-
-
-
-
-
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
THR 6(B)
O: OXT
1
ALA 7(B)
-
0
ARG 8(B)
O: OXT
1
MYK 9(B)
-
0
SER 10(B)
CB: C
|
C: CB
|
O: OG
|
OG: OXT
4
THR 11(B)
O: OXT
1
GLY 12(B)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product L-lysine with similarity 50.00%
LIGPLOT
of interactions involving ligand THR-ALA-ARG-MYK-SER-THR-GLY
List of
interactions
THR 6(B) to GLY 12(B)
_ZN
