PDBsum entry 2fd0

Ligand/metal interactions

PDB id

2fd0


	2 instances of ligand highlighted
	LIV

Ligands

LIV ×2

LIV 1001(A)

LIV 2001(B)

Metals

__K ×4

K 44(A)

K 90(B)

K 1002(A)

K 2002(B)

_CL

CL 66(B)

Ligand LIV - (2r,3s,4s,5s,6r)-2-((2s,3s,4r,5r,6r)-5-Amino-2-
(Aminomethyl)-6-((2r,3s,4r,5s)-5-((1r,2r,3s,5r,6s)-3, 5-
Diamino-2-((2s,3r ,5s,6r)-3-Amino-5-Hydroxy-6-
(Hydroxymethyl)-Tetrahydro-2h-Pyran-2-Yloxy)-6-
Hydroxycyclohexyloxy)-4-Hydroxy-2-(Hydroxymet hyl)-
Tetrahydrofuran-3-Yloxy)-4-Hydroxy-Tetrahydro-2h- Pyran-
3-Yloxy)-6-(Hydroxymethyl)-Tetrahydro-2h-Pyran- 3,4,5-Triol
[Lividomycin a; o-2-Amino-2,3-Dideoxy-Alpha-D-
Glucopyranosyl-(1,4)-O-[Beta-D-Mannopyranosyl-(1,4)-O-
2,6-Diamino-2,6-Dideoxy-Beta-L-Idopy ranosyl-(1,3)- Beta-
D-Ribofuranosyl-(1,5)-2-Deoxy-D-Streptamine]
Formula: C₂₉H₅₅N₅O₁₈

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
LIV 1001(A)	52	52	0	0	Complete		Chiral checks - OK

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

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LIGPLOT of interactions involving ligand LIV

List of
interactions

LIV 1001(A)