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PDBsum entry 2fd0
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Tunnel analysis for: 2fd0 calculated with  MOLE 2.0
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PDB id
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2fd0
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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5 tunnels,
coloured by tunnel radius |
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11 tunnels,
coloured by
tunnel radius
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11 tunnels,
coloured as in
list below
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Length
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Hydropathy
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Hydrophobicity
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Polarity
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Mutability
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Residue..type
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Ligands
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Radius |
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1 |
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2.27 |
12.4 |
-0.40 |
-0.80 |
3.4 |
0 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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2 U B,3 5BU B,4 G B,15 C B,16 A B,17 C B,18 A B,
90 K B,2002 K B
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2 |
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3.19 |
17.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 A A,10 G A,11 U A,12 G A,1001 LIV A,7 G B,8 A B,
9 A B,11 U B,12 G B,13 C B,14 A B,15 C B,2001 LIV
B
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3 |
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1.20 |
18.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 G B,5 C B,6 U B,14 A B,15 C B,16 A B,17 C B,
2001 LIV B
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4 |
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2.16 |
18.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1 C B,2 U B,3 5BU B,4 G B,16 A B,17 C B,18 A B,19
G B,20 C B,22 A B,66 CL B,2002 K B
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5 |
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2.93 |
18.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
7 G A,8 A A,9 A A,11 U A,12 G A,13 C A,14 A A,15
C A,16 A A,1001 LIV A,10 G B,11 U B,2001 LIV B
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6 |
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2.73 |
18.7 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 A A,10 G A,11 U A,12 G A,1001 LIV A,7 G B,8 A B,
9 A B,11 U B,13 C B,14 A B,15 C B,16 A B,2001 LIV
B
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7 |
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3.19 |
19.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
9 A A,10 G A,11 U A,12 G A,1001 LIV A,6 U B,7 G B,
9 A B,11 U B,12 G B,13 C B,14 A B,15 C B,2001 LIV
B
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8 |
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1.47 |
22.0 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
6 U A,7 G A,9 A A,11 U A,12 G A,13 C A,14 A A,15
C A,1001 LIV A,11 U B,2001 LIV B
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9 |
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1.97 |
26.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 G A,5 C A,6 U A,7 G A,9 A A,11 U A,12 G A,13 C
A,14 A A,15 C A,1001 LIV A,11 U B,2001 LIV B
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10 |
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3.30 |
30.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 U A,3 5BU A,4 G A,5 C A,6 U A,7 G A,9 A A,11 U
A,12 G A,13 C A,14 A A,15 C A,16 A A,1001 LIV A,
1002 K A,11 U B,2001 LIV B
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11 |
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2.55 |
32.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
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2 U A,3 5BU A,4 G A,5 C A,6 U A,7 G A,9 A A,11 U
A,12 G A,13 C A,14 A A,15 C A,16 A A,17 C A,1001
LIV A,1002 K A,11 U B,2001 LIV B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program