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PDBsum entry 2aiz
Go to PDB code:
Ligand/metal interactions
PDB id
2aiz
Ligand highlighted
ALA-DGL-6CL-DAL-
DAL
Ligands
ALA-DGL-6CL-DAL-
DAL
ALA 3(U) to DAL 7(U)
AMU-UDP
AMU 101(U) to UDP 102(U)
Ligand
ALA-DGL-6CL-DAL-DAL
DGL
-
D-Glutamic acid
Formula:
C
5
H
9
NO
4
6CL
-
6-Carboxylysine
Formula:
C
7
H
15
N
2
O
4
DAL
-
D-Alanine
Formula:
C
3
H
7
NO
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
UDP 1(U)
25
25
1
0
0
0
0
0
0
0
AMU 2(U)
20
20
1
1
0
0
0
0
0
0
ALA 3(U)
6
-
-
-
-
-
-
-
-
-
DGL 4(U)
10
10
1
1
0
0
0
0
0
0
6CL 5(U)
13
13
1
1
0
0
0
0
2
0
DAL 6(U)
6
-
-
-
-
-
-
-
-
-
DAL 7(U)
6
-
-
-
-
-
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
UDP 1(U)
O2A: O1A
|
O1A: O2A
|
O1B: O2B
3
AMU 2(U)
-
0
ALA 3(U)
-
0
DGL 4(U)
OE2: OE1
|
OE1: OE2
2
6CL 5(U)
NZ: N
|
CE: CA
|
CD: CB
|
CB: CD
|
CA: CE...
11
DAL 6(U)
-
0
DAL 7(U)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand ALA-DGL-6CL-DAL-DAL
List of
interactions
ALA 3(U) to DAL 7(U)
