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PDBsum entry 1vps
Go to PDB code:
Ligand/metal interactions
PDB id
1vps
5 instances of ligand highlighted
NAG-GAL-SIA-SIA
Ligands
NAG-GAL-SIA-SIA
×5
NAG 1(F) to SIA 4(F)
Ligand
NAG-GAL-SIA-SIA
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
GAL
-
Beta-D-Galactopyranose [Beta-D-Galactose; d-Galactose; galactose]
Formula:
C
6
H
12
O
6
SIA
-
N-Acetyl-Alpha-Neuraminic acid [N-Acetylneuraminic acid; sialic acid; alpha-Sialic acid; o-Sialic acid]
Formula:
C
11
H
19
NO
9
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(F)
15
15
0
0
Complete
Chiral checks - OK
GAL 2(F)
12
12
1
0
Complete
Chiral checks - OK
SIA 3(F)
21
21
1
0
Complete
Chiral checks - OK
SIA 4(F)
21
21
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-GAL-SIA-SIA
List of
interactions
NAG 1(F) to SIA 4(F)
also representing 4 other equivalent ligands:
NAG 1(G) to SIA 4(G)
NAG 1(H) to SIA 4(H)
NAG 1(I) to SIA 4(I)
NAG 1(J) to SIA 4(J)
