PDBsum entry 1vps Go to PDB code:  Tunnel analysis for: 1vps calculated with MOLE 2.0 PDB id 1vps Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.26 27.3 -1.54 -0.44 16.8 77 2 3 2 2 4 1 0  SIA 3 H 2 1.11 1.11 29.5 -1.53 -0.42 14.7 79 2 3 3 2 4 1 0  SIA 3 H 3 1.19 1.27 37.9 -1.29 -0.44 18.7 78 3 5 1 3 3 1 0   4 1.11 1.11 40.2 -1.37 -0.42 17.7 80 3 5 2 3 3 1 0   5 1.20 1.26 31.2 -1.37 -0.38 15.1 80 3 3 3 3 4 1 0  GAL 2 J SIA 3 J 6 1.20 1.27 37.2 -1.32 -0.46 18.5 80 3 5 2 3 3 1 0   7 1.25 1.29 18.2 -1.10 -0.56 8.9 78 1 0 1 1 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.