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PDBsum entry 1sdk
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Ligand/metal interactions
PDB id
1sdk
4 instances of ligand highlighted
HEM-CMO
Ligands
HEM-CMO
×4
HEM 200(A) to CMO 201(A)
HEM 200(B) to CMO 201(B)
TMM
TMM 300(D)
Ligand
HEM-CMO
HEM
-
Protoporphyrin IX containing fe [Heme]
Formula:
C
34
H
32
FeN
4
O
4
CMO
-
Carbon monoxide
Formula:
CO
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
HEM 200(A)
43
43
0
0
Complete
Chiral checks - OK
CMO 201(A)
2
-
-
-
Residue too small to validate
Advanced Analysis
Residue
Name Mismatches
Count
HEM 200(A)
O2A: O1A
|
O1A: O2A
|
O2D: O1D
|
O1D: O2D
4
CMO 201(A)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand HEM-CMO
List of
interactions
HEM 200(A) to CMO 201(A)
(also representing equivalent ligand HEM 200(C) to CMO 201(C) )
