PDBsum entry 1sdk

Pore analysis for: 1sdk calculated with

MOLE 2.0

PDB id

1sdk

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

11 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.14

2.47

29.4

-1.33

-0.02

15.0

77

5

1

1

2

2

2

1

2

1.73

2.07

36.1

-2.42

-0.19

25.1

79

8

3

2

1

2

2

1

3

1.72

2.07

40.8

-1.77

-0.10

23.4

72

5

5

0

3

4

4

2

4

2.13

2.48

45.3

-0.79

-0.04

15.9

77

5

4

2

6

4

5

1

5

1.22

1.21

46.2

0.78

0.40

9.3

74

5

1

1

10

4

2

1

HEM 200 B

6

2.27

3.01

50.4

-1.33

-0.18

20.0

80

8

4

3

7

3

4

0

7

1.26

1.23

51.3

-0.04

0.16

15.0

78

8

1

2

11

3

1

0

HEM 200 B

8

1.70

2.06

51.6

-1.38

-0.17

22.3

76

6

4

1

5

3

5

1

9

1.11

1.35

57.2

-2.12

-0.23

26.7

76

9

5

2

6

3

4

0

10

1.27

1.27

60.3

-0.77

0.03

20.6

74

7

5

1

11

5

3

1

HEM 200 B

11

1.30

1.27

60.6

-0.06

0.07

13.5

77

7

2

2

14

5

3

0

HEM 200 B

12

1.27

1.62

69.6

-0.86

0.02

20.8

74

8

4

2

13

5

3

0

HEM 200 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.