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PDBsum entry 1kj3
Go to PDB code:
Ligand/metal interactions
PDB id
1kj3
2 instances of ligand highlighted
LYS-VAL-ILE-THR-
PHE-ILE-ASP-LEU
Ligands
LYS-VAL-ILE-THR-
PHE-ILE-ASP-LEU
×2
LYS 1(P) to LEU 8(P)
Ligand
LYS-VAL-ILE-THR-PHE-ILE-ASP-LEU
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LYS 1(P)
10
10
1
1
Complete
Chiral checks - OK
VAL 2(P)
8
8
1
1
Complete
Chiral checks - OK
ILE 3(P)
9
9
1
1
Complete
Chiral checks - OK
THR 4(P)
8
8
1
1
Complete
Chiral checks - OK
PHE 5(P)
12
12
1
1
Complete
Chiral checks - OK
ILE 6(P)
9
9
1
1
Complete
Chiral checks - OK
ASP 7(P)
9
9
1
1
Complete
Chiral checks - OK
LEU 8(P)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
LYS 1(P)
-
0
VAL 2(P)
-
0
ILE 3(P)
-
0
THR 4(P)
-
0
PHE 5(P)
O: OXT
1
ILE 6(P)
O: OXT
1
ASP 7(P)
OD2: OD1
|
OD1: OD2
|
O: OXT
3
LEU 8(P)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand LYS-VAL-ILE-THR-PHE-ILE-ASP-LEU
List of
interactions
LYS 1(P) to LEU 8(P)
(also representing equivalent ligand LYS 1(Q) to LEU 8(Q) )
