PDBsum entry 1kj3 Go to PDB code:  Tunnel analysis for: 1kj3 calculated with MOLE 2.0 PDB id 1kj3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.18 16.7 0.20 -0.06 3.8 75 1 0 3 5 2 0 0   2 1.53 1.63 17.6 -0.71 -0.09 7.0 77 1 1 1 2 1 2 0   3 1.35 1.72 18.4 0.63 0.35 6.5 75 2 0 0 3 4 1 0   4 1.26 1.26 16.2 -1.09 -0.21 17.8 74 3 1 1 3 1 2 0   5 1.43 1.55 16.4 -2.34 -0.55 20.0 84 2 1 2 2 1 0 0   6 1.10 1.58 15.2 1.54 0.67 3.0 78 1 0 0 4 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.