Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: inc/head.html
PDBsum entry 1k9f
Go to PDB code:
Ligand/metal interactions
PDB id
1k9f
Ligand highlighted
XYP-XYP-GCV
Ligands
XYP-XYP-GCV
XYP 1(B) to GCV 3(B)
GOL
×12
GOL 801(A)
GOL 802(A)
GOL 803(A)
GOL 804(A)
GOL 805(A)
GOL 806(A)
GOL 807(A)
GOL 808(A)
GOL 809(A)
GOL 810(A)
GOL 811(A)
GOL 812(A)
Ligand
XYP-XYP-GCV
XYP
-
Beta-D-Xylopyranose [Beta-D-Xylose; d-Xylose; xylose]
Formula:
C
5
H
10
O
5
GCV
-
4-O-Methyl-Alpha-D-Glucopyranuronic acid [4-O-Methyl-Alpha-D-Glucuronic acid; 4-O-Methyl-D- Glucuronic acid; 4-O-Methyl-Glucuronic acid]
Formula:
C
7
H
12
O
7
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
XYP 1(B)
10
10
0
0
Complete
Chiral checks - OK
XYP 2(B)
10
10
1
0
Complete
Chiral checks - OK
GCV 3(B)
14
14
1
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
XYP 1(B)
-
0
XYP 2(B)
-
0
GCV 3(B)
O6B: O6A
|
O6A: O6B
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
Use mouse to move/zoom
3D Viewers:
Het Group XYP matches this enzyme's product D-glucuronate with similarity 76.00%
LIGPLOT
of interactions involving ligand XYP-XYP-GCV
List of
interactions
XYP 1(B) to GCV 3(B)
