PDBsum entry 1k9f Go to PDB code:  Tunnel analysis for: 1k9f calculated with MOLE 2.0 PDB id 1k9f Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.40 1.41 15.3 0.37 0.66 10.0 78 1 2 1 2 2 0 0   2 1.39 1.40 15.4 -0.69 0.25 19.4 76 1 2 1 2 2 0 0   3 1.35 1.48 27.0 -0.84 -0.01 11.7 77 3 3 0 2 4 0 0   4 1.36 1.47 28.0 -0.84 -0.01 11.6 76 3 3 0 3 4 0 0   5 1.42 1.49 16.0 0.01 0.29 5.1 71 1 0 1 1 4 1 0  GOL 804 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.