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PDBsum entry 1jgd
Go to PDB code:
Ligand/metal interactions
PDB id
1jgd
Ligand highlighted
ARG-ARG-LEU-LEU-
ARG-GLY-HIS-ASN-
GLN-TYR
Ligands
ARG-ARG-LEU-LEU-
ARG-GLY-HIS-ASN-
GLN-TYR
ARG 1(C) to TYR 10(C)
GOL
GOL 500(A)
Ligand
ARG-ARG-LEU-LEU-ARG-GLY-HIS-ASN-GLN-TYR
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ARG 1(C)
12
12
1
1
Complete
Chiral checks - OK
ARG 2(C)
12
12
1
1
Complete
Chiral checks - OK
LEU 3(C)
9
9
1
1
Complete
Chiral checks - OK
LEU 4(C)
9
9
1
1
Complete
Chiral checks - OK
ARG 5(C)
12
12
1
1
Complete
Chiral checks - OK
GLY 6(C)
5
-
-
-
Residue too small to validate
HIS 7(C)
11
11
1
1
Complete
Chiral checks - OK
ASN 8(C)
9
9
1
1
Complete
Chiral checks - OK
GLN 9(C)
10
10
1
1
Complete
Chiral checks - OK
TYR 10(C)
13
13
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ARG 1(C)
-
0
ARG 2(C)
-
0
LEU 3(C)
-
0
LEU 4(C)
O: OXT
1
ARG 5(C)
-
0
GLY 6(C)
-
0
HIS 7(C)
-
0
ASN 8(C)
O: OXT
1
GLN 9(C)
-
0
TYR 10(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
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Validator
DB
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3D Viewers:
LIGPLOT
of interactions involving ligand ARG-ARG-LEU-LEU-ARG-GLY-HIS-ASN-GLN-TYR
List of
interactions
ARG 1(C) to TYR 10(C)
