PDBsum entry 1jgd Go to PDB code:  Tunnel analysis for: 1jgd calculated with MOLE 2.0 PDB id 1jgd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.62 1.66 22.4 -1.10 -0.01 14.1 73 1 3 2 2 4 1 0   2 1.49 2.63 21.3 -1.88 -0.28 26.4 80 5 2 1 2 2 0 0   3 1.48 1.72 15.7 -0.77 -0.06 25.6 93 3 1 2 3 0 0 0   4 1.53 1.72 16.2 -0.82 -0.04 26.1 91 3 1 2 3 0 0 0   5 1.43 1.44 15.1 -1.62 -0.53 16.9 82 1 3 1 1 1 1 0   6 1.57 1.67 15.7 0.06 -0.01 16.1 75 2 1 1 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.