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1 Installation of FREGENE
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FREGENE: Sequence-level simulations over
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Overview
User Guidelines
This documentation details options and features implemented in
FREGENE
. For a quicker description of its basic functionalities please refer to the 'quick start guide' at the end of this document.
Subsections
1
Installation of
FREGENE
2
Contents of the
FREGENE
Package
2
.
1
Fregene_source
directory
2
.
2
Sample
directory
2
.
3
Common
directory
2
.
4
Example
directory
3
Running
FREGENE
3
.
1
Input Files
Initial population (
-i file_name
; required)
3
.
1
.
1
Evolutionary and simulation parameters (
-p file_name
; required)
3
.
2
Recombination parameters (
-recomb file_name
; required)
4
Output files
4
.
1
Log file
4
.
2
Main output file (
-o file_name
; required)
4
.
3
Other output files enabled by additional options
5
Additional command line options
6
Using
SAMPLE
7
Quick start guide
Imperial College -- August 2008
