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Overview
F
REGENE
: Sequence-level simulations over large genomic regions in large populations
DOCUMENTATION
Overview
Summary of
FREGENE
's modelling assumptions
Features of the implementation
User Guidelines
1
Installation of
FREGENE
2
Contents of the
FREGENE
Package
2
.
1
Fregene_source
directory
2
.
2
Sample
directory
2
.
3
Common
directory
2
.
4
Example
directory
3
Running
FREGENE
3
.
1
Input Files
3
.
2
Recombination parameters (
-recomb file_name
; required)
4
Output files
4
.
1
Log file
4
.
2
Main output file (
-o file_name
; required)
4
.
3
Other output files enabled by additional options
5
Additional command line options
6
Using
SAMPLE
7
Quick start guide
About this document ...
Imperial College -- August 2008
