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PDBsum entry 9j9s
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PDB id:
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Isomerase
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Title:
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Artificial mononuclear zn-bound metalloprotein 5 (m5:zn)
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Structure:
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Dtdp-4-dehydrorhamnose 3,5-epimerase. Chain: a, b, c, d. Synonym: thymidine diphospho-4-keto-rhamnose 3,5-epimerase,dtdp-4- keto-6-deoxyglucose 3,dtdp-6-deoxy-d-xylo-4-hexulose 3,dtdp-l- rhamnose synthase. Engineered: yes. Other_details: deoxythymidine diphosphate (dtdp)-4-keto-6-deoxy-d- hexulose 3, 5-epimerase (rmlc)
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Source:
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Methanothermobacter thermautotrophicus. Organism_taxid: 145262. Gene: rmlc, mth_1790. Expressed in: escherichia coli. Expression_system_taxid: 562
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Resolution:
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2.60Å
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R-factor:
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0.259
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R-free:
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0.305
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Authors:
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W.J.Jeong,W.J.Song
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Key ref:
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W.J.Jeong
and
w.j.song
Metal-Installer: a protein designer tool to create metal-Binding sites.
To be published,
.
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Date:
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23-Aug-24
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Release date:
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02-Jul-25
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PROCHECK
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Headers
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References
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O27818
(RMLC_METTH) -
dTDP-4-dehydrorhamnose 3,5-epimerase from Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
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Seq:
Struc:
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185 a.a.
183 a.a.*
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Key: |
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Secondary structure |
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*
PDB and UniProt seqs differ
at 3 residue positions (black
crosses)
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Enzyme class:
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E.C.5.1.3.13
- dTDP-4-dehydrorhamnose 3,5-epimerase.
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Pathway:
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6-Deoxyhexose Biosynthesis
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Reaction:
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dTDP-4-dehydro-6-deoxy-alpha-D-glucose = dTDP-4-dehydro-beta-L-rhamnose
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dTDP-4-dehydro-6-deoxy-alpha-D-glucose
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=
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dTDP-4-dehydro-beta-L-rhamnose
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Cofactor:
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NAD(+)
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NAD(+)
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Molecule diagrams generated from .mol files obtained from the
KEGG ftp site
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Links
