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PDBsum entry 8s4f

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protein ligands metals Protein-protein interface(s) links
Lyase PDB id
8s4f

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
256 a.a.
Ligands
PPI
TRS
DMS
EDO ×5
VV8 ×2
ACY
Metals
_ZN ×2
Waters ×497
PDB id:
8s4f
Name: Lyase
Title: Human carbonic anhydrase i covalently bound to av21-08
Structure: Carbonic anhydrase 1. Chain: a, b. Synonym: carbonate dehydratase i,carbonic anhydrase b,cab,carbonic anhydrase i,ca-i,cyanamide hydratase ca1. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ca1. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Resolution:
1.39Å     R-factor:   0.205     R-free:   0.234
Authors: E.N.Manakova,S.Grazulis,V.Paketuryte-Latve,A.Vaskevicius,A.Smirnov
Key ref: A.Vaskevicius et al. Targeted anticancer pre-Vinylsulfone covalent inhibit carbonic anhydrase IX. Elife, . PubMed id: 39688904
Date:
21-Feb-24     Release date:   18-Dec-24    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P00915  (CAH1_HUMAN) -  Carbonic anhydrase 1 from Homo sapiens
Seq:
Struc:
261 a.a.
256 a.a.
Key:    PfamA domain  Secondary structure

 Enzyme reactions 
   Enzyme class 2: E.C.4.2.1.1  - carbonic anhydrase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: hydrogencarbonate + H+ = CO2 + H2O
hydrogencarbonate
+ H(+)
=
CO2
Bound ligand (Het Group name = PPI)
matches with 60.00% similarity
+ H2O
      Cofactor: Zn(2+)
   Enzyme class 3: E.C.4.2.1.69  - cyanamide hydratase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: urea = cyanamide + H2O
urea
= cyanamide
+ H2O
Note, where more than one E.C. class is given (as above), each may correspond to a different protein domain or, in the case of polyprotein precursors, to a different mature protein.
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 

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