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PDBsum entry 8k5h
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protein ligands Protein-protein interface(s) links
Viral protein/immune system PDB id
8k5h

 

 

 

 

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Contents
Protein chains
1041 a.a.
853 a.a.
122 a.a.
107 a.a.
Ligands
NAG-NAG ×8
NAG ×34
PDB id:
8k5h
Name: Viral protein/immune system
Title: Structure of the sars-cov-2 ba.1 spike with ut28-rd
Structure: Spike glycoprotein. Chain: b, a, c. Synonym: s glycoprotein,e2,peplomer protein. Engineered: yes. Mutation: yes. Ut28k-rd fab heavy chain. Chain: h. Engineered: yes. Ut28k-rd fab light chain.
Source: Severe acute respiratory syndrome coronavirus 2. 2019-ncov,sars-cov-2. Organism_taxid: 2697049. Gene: s, 2. Expressed in: homo sapiens. Expression_system_taxid: 9606. Homo sapiens. Organism_taxid: 9606.
Authors: L.Chen,S.Kita,Y.Anraku,K.Maenaka
Key ref: T.Ozawa et al. In silico-Designed ut28k with two amino acid substitu is capable of neutralization of resistant sars-Cov2 o ba.1 valiant.. To be published, . PubMed id: 38228146
Date:
21-Jul-23     Release date:   27-Dec-23    
PROCHECK
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 Headers
 References

Protein chains
P0DTC2  (SPIKE_SARS2) -  Spike glycoprotein from Severe acute respiratory syndrome coronavirus 2
Seq:
Struc: 		 
Seq:
Struc: 		 
Seq:
Struc: 		1273 a.a.
1041 a.a.*
Protein chain
No UniProt id for this chain
Struc:  
Struc: 853 a.a.
Protein chain
No UniProt id for this chain
Struc: 122 a.a.
Protein chain
No UniProt id for this chain
Struc: 107 a.a.
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 36 residue positions (black crosses)

 

 

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