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PDBsum entry 8hws
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protein ligands Protein-protein interface(s) links
Immune system/viral protein PDB id
8hws

 

 

 

 

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Contents
Protein chains
196 a.a.
219 a.a.
213 a.a.
222 a.a.
214 a.a.
230 a.a.
214 a.a.
Ligands
NAG-NAG-FUC
PDB id:
8hws
Name: Immune system/viral protein
Title: The complex structure of omicron ba.4 rbd with bd604, s309, and s304
Structure: Spike protein s2'. Chain: a. Engineered: yes. Bd-604 fab heavy chain. Chain: h. Engineered: yes. Bd-604 fab light chain. Chain: l. Engineered: yes.
Source: Severe acute respiratory syndrome coronavirus 2. 2019-ncov, sars-cov-2. Organism_taxid: 2697049. Strain: omicron/ba.4. Gene: s, 2. Expressed in: homo sapiens. Expression_system_taxid: 9606. Expression_system_cell_line: hek293f.
Authors: Q.W.He,Z.P.Xu,Y.F.Xie
Key ref: Q.He et al. (2023). An updated atlas of antibody evasion by sars-Cov-2 om sub-Variants including bq.1.1 and xbb.. Cell rep med, 4, 00991. PubMed id: 37019110
Date:
02-Jan-23     Release date:   06-Dec-23    
PROCHECK
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 Headers
 References

Protein chain
P0DTC2  (SPIKE_SARS2) -  Spike glycoprotein from Severe acute respiratory syndrome coronavirus 2
Seq:
Struc: 		 
Seq:
Struc: 		 
Seq:
Struc: 		1273 a.a.
196 a.a.*
Protein chain
No UniProt id for this chain
Struc: 219 a.a.
Protein chain
No UniProt id for this chain
Struc: 213 a.a.
Protein chain
No UniProt id for this chain
Struc: 222 a.a.
Protein chain
No UniProt id for this chain
Struc: 214 a.a.
Protein chain
No UniProt id for this chain
Struc: 230 a.a.
Protein chain
No UniProt id for this chain
Struc: 214 a.a.
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 17 residue positions (black crosses)

 

 

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