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PDBsum entry 5zoj

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protein Protein-protein interface(s) links
DNA binding protein PDB id
5zoj

 

 

 

 

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Contents
Protein chains
187 a.a.
127 a.a.
116 a.a.
PDB id:
5zoj
Name: DNA binding protein
Title: Crystal structure of human smad2-man1 complex
Structure: Mothers against decapentaplegic homolog 2. Chain: a, b, c. Fragment: unp residues 262-458. Synonym: mothers against dpp homolog 2,jv18-1,mad-related protein 2, hmad-2,smad family member 2,hsmad2. Engineered: yes. Inner nuclear membrane protein man1. Chain: d, e. Fragment: unp residues 762-890.
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: smad2. Expressed in: escherichia coli. Expression_system_taxid: 562. Gene: man1. Expression_system_taxid: 562
Resolution:
2.79Å     R-factor:   0.243     R-free:   0.269
Authors: K.Miyazono,Y.Ohno,T.Ito,M.Tanokura
Key ref: K.I.Miyazono et al. (2018). Structural basis for receptor-regulated SMAD recognition by MAN1. Nucleic Acids Res, 46, 12139-12153. PubMed id: 30321401 DOI: 10.1093/nar/gky925
Date:
13-Apr-18     Release date:   10-Oct-18    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q15796  (SMAD2_HUMAN) -  Mothers against decapentaplegic homolog 2 from Homo sapiens
Seq:
Struc:
467 a.a.
187 a.a.
Protein chain
Pfam   ArchSchema ?
Q9Y2U8  (MAN1_HUMAN) -  Inner nuclear membrane protein Man1 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
911 a.a.
127 a.a.
Protein chain
Pfam   ArchSchema ?
Q9Y2U8  (MAN1_HUMAN) -  Inner nuclear membrane protein Man1 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
911 a.a.
116 a.a.
Key:    PfamA domain  Secondary structure

 Enzyme reactions 
   Enzyme class: Chains A, B, C, D, E: E.C.?
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

 

 
DOI no: 10.1093/nar/gky925 Nucleic Acids Res 46:12139-12153 (2018)
PubMed id: 30321401  
 
 
Structural basis for receptor-regulated SMAD recognition by MAN1.
K.I.Miyazono, Y.Ohno, H.Wada, T.Ito, Y.Fukatsu, A.Kurisaki, M.Asashima, M.Tanokura.
 
  ABSTRACT  
 
Receptor-regulated SMAD (R-SMAD: SMAD1, SMAD2, SMAD3, SMAD5 and SMAD8) proteins are key transcription factors of the transforming growth factor-β (TGF-β) superfamily of cytokines. MAN1, an integral protein of the inner nuclear membrane, is a SMAD cofactor that terminates TGF-β superfamily signals. Heterozygous loss-of-function mutations in MAN1 result in osteopoikilosis, Buschke-Ollendorff syndrome and melorheostosis. MAN1 interacts with MAD homology 2 (MH2) domains of R-SMAD proteins using its C-terminal U2AF homology motif (UHM) domain and UHM ligand motif (ULM) and facilitates R-SMAD dephosphorylation. Here, we report the structural basis for R-SMAD recognition by MAN1. The SMAD2-MAN1 and SMAD1-MAN1 complex structures show that an intramolecular UHM-ULM interaction of MAN1 forms a hydrophobic surface that interacts with a hydrophobic surface among the H2 helix, the strands β8 and β9, and the L3 loop of the MH2 domains of R-SMAD proteins. The complex structures also show the mechanism by which SMAD cofactors distinguish R-SMAD proteins that possess a highly conserved molecular surface.
 

 

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