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PDBsum entry 5clr

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protein Protein-protein interface(s) links
Transferase PDB id
5clr

 

 

 

 

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Contents
Protein chains
376 a.a.
321 a.a.
PDB id:
5clr
Name: Transferase
Title: Crystal structure of legk4_apo kinase
Structure: Legk4. Chain: a, b. Engineered: yes
Source: Legionella pneumophila (strain lens). Organism_taxid: 297245. Gene: lpl0262. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008
Resolution:
3.71Å     R-factor:   0.284     R-free:   0.311
Authors: A.Flayhan,L.Terradot
Key ref: A.Flayhan et al. (2015). The structure of Legionella pneumophila LegK4 type four secretion system (T4SS) effector reveals a novel dimeric eukaryotic-like kinase. Sci Rep, 5, 14602. PubMed id: 26419332 DOI: 10.1038/srep14602
Date:
16-Jul-15     Release date:   14-Oct-15    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q5WZW9  (Q5WZW9_LEGPL) -  Protein kinase domain-containing protein from Legionella pneumophila (strain Lens)
Seq:
Struc:
 
Seq:
Struc:
961 a.a.
376 a.a.
Protein chain
Pfam   ArchSchema ?
Q5WZW9  (Q5WZW9_LEGPL) -  Protein kinase domain-containing protein from Legionella pneumophila (strain Lens)
Seq:
Struc:
 
Seq:
Struc:
961 a.a.
321 a.a.*
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 5 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: Chains A, B: E.C.2.7.11.1  - non-specific serine/threonine protein kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction:
1. L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H+
2. L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H+
L-seryl-[protein]
+ ATP
= O-phospho-L-seryl-[protein]
+ ADP
+ H(+)
L-threonyl-[protein]
+ ATP
= O-phospho-L-threonyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
DOI no: 10.1038/srep14602 Sci Rep 5:14602 (2015)
PubMed id: 26419332  
 
 
The structure of Legionella pneumophila LegK4 type four secretion system (T4SS) effector reveals a novel dimeric eukaryotic-like kinase.
A.Flayhan, C.Bergé, N.Baïlo, P.Doublet, R.Bayliss, L.Terradot.
 
  ABSTRACT  
 
Bacterial pathogens subvert signalling pathways to promote invasion and/or replication into the host. LegK1-4 proteins are eukaryotic-like serine/threonine kinases that are translocated by the Dot/Icm type IV secretion system (T4SS) of several Legionella pneumophila strains. We present the crystal structures of an active fragment of the LegK4 protein in apo and substrate-bound states. The structure of LegK4(1-445) reveals a eukaryotic-like kinase domain flanked by a novel cap domain and a four-helix bundle. The protein self-assembles through interactions mediated by helices αF and αG that generate a dimeric interface not previously observed in a protein kinase. The helix αG is displaced compared to previous kinase structures, and its role in stabilization of the activation loop is taken on by the dimerisation interface. The apo-form of the protein has an open conformation with a disordered P-loop but a structured activation segment in absence of targeted phosphorylation. The nucleotide-binding site of LegK4 contains an unusual set of residues that mediate non-canonical interactions with AMP-PNP. Nucleotide binding results in limited changes in the active site, suggesting that LegK4 constitutive kinase activity does not depend on phosphorylation of the activation loop but on the stabilizing effects of the dimer.
 

 

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