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PDBsum entry 5e89

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protein ligands metals links
Sugar binding protein/inhibitor PDB id
5e89

 

 

 

 

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Contents
Protein chain
137 a.a.
Ligands
TD2
Metals
_CL
Waters ×162
PDB id:
5e89
Name: Sugar binding protein/inhibitor
Title: Crystal structure of human galectin-3 crd in complex with 3- fluophenyl-1,2,3-triazolyl thiodigalactoside inhibitor
Structure: Galectin-3. Chain: a. Fragment: unp residues 114-250. Synonym: gal-3,35 kda lectin,carbohydrate-binding protein 35,cbp 35, galactose-specific lectin 3,galactoside-binding protein,galbp,ige- binding protein,l-31,laminin-binding protein,lectin l-29,mac-2 antigen. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: lgals3, mac2. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Resolution:
1.50Å     R-factor:   0.169     R-free:   0.190
Authors: P.M.Collins,H.Blanchard
Key ref: T.Delaine et al. (2016). Galectin-3-Binding Glycomimetics that Strongly Reduce Bleomycin-Induced Lung Fibrosis and Modulate Intracellular Glycan Recognition. Chembiochem, 17, 1759-1770. PubMed id: 27356186 DOI: 10.1002/cbic.201600285
Date:
13-Oct-15     Release date:   24-Aug-16    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P17931  (LEG3_HUMAN) -  Galectin-3 from Homo sapiens
Seq:
Struc:
250 a.a.
137 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
DOI no: 10.1002/cbic.201600285 Chembiochem 17:1759-1770 (2016)
PubMed id: 27356186  
 
 
Galectin-3-Binding Glycomimetics that Strongly Reduce Bleomycin-Induced Lung Fibrosis and Modulate Intracellular Glycan Recognition.
T.Delaine, P.Collins, A.MacKinnon, G.Sharma, J.Stegmayr, V.K.Rajput, S.Mandal, I.Cumpstey, A.Larumbe, B.A.Salameh, B.Kahl-Knutsson, H.van Hattum, M.van Scherpenzeel, R.J.Pieters, T.Sethi, H.Schambye, S.Oredsson, H.Leffler, H.Blanchard, U.J.Nilsson.
 
  ABSTRACT  
 
Discovery of glycan-competitive galectin-3-binding compounds that attenuate lung fibrosis in a murine model and that block intracellular galectin-3 accumulation at damaged vesicles, hence revealing galectin-3-glycan interactions involved in fibrosis progression and in intracellular galectin-3 activities, is reported. 3,3'-Bis-(4-aryltriazol-1-yl)thiodigalactosides were synthesized and evaluated as antagonists of galectin-1, -2, -3, and -4 N-terminal, -4 C-terminal, -7 and -8 N-terminal, -9 N-terminal, and -9 C-terminal domains. Compounds displaying low-nanomolar affinities for galectins-1 and -3 were identified in a competitive fluorescence anisotropy assay. X-ray structural analysis of selected compounds in complex with galectin-3, together with galectin-3 mutant binding experiments, revealed that both the aryltriazolyl moieties and fluoro substituents on the compounds are involved in key interactions responsible for exceptional affinities towards galectin-3. The most potent galectin-3 antagonist was demonstrated to act in an assay monitoring galectin-3 accumulation upon amitriptyline-induced vesicle damage, visualizing a biochemically/medically relevant intracellular lectin-carbohydrate binding event and that it can be blocked by a small molecule. The same antagonist administered intratracheally attenuated bleomycin-induced pulmonary fibrosis in a mouse model with a dose/response profile comparing favorably with that of oral administration of the marketed antifibrotic compound pirfenidone.
 

 

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