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PDBsum entry 4z8b

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protein ligands metals links
Sugar binding protein PDB id
4z8b

 

 

 

 

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Contents
Protein chain
231 a.a.
Ligands
SO4 ×2
GOL
XMM
Metals
_CA
_MN
Waters ×70
PDB id:
4z8b
Name: Sugar binding protein
Title: Crystal structure of a dgl mutant - h51g h131n
Structure: Lectin alpha chain. Chain: a. Engineered: yes. Mutation: yes
Source: Dioclea grandiflora. Mucana. Organism_taxid: 3837. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008
Resolution:
1.95Å     R-factor:   0.203     R-free:   0.243
Authors: S.Zamora-Caballero,A.Perez,L.Sanz,J.Bravo,J.J.Calvete
Key ref: S.Zamora-Caballero et al. (2015). Quaternary structure of Dioclea grandiflora lectin assessed by equilibrium sedimentation and crystallographic analysis of recombinant mutants. Febs Lett, 589, 2290-2296. PubMed id: 26226421 DOI: 10.1016/j.febslet.2015.07.020
Date:
08-Apr-15     Release date:   22-Jul-15    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P08902  (LECA_DIOGR) -  Lectin alpha chain from Dioclea grandiflora
Seq:
Struc:
237 a.a.
231 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 4 residue positions (black crosses)

 

 
DOI no: 10.1016/j.febslet.2015.07.020 Febs Lett 589:2290-2296 (2015)
PubMed id: 26226421  
 
 
Quaternary structure of Dioclea grandiflora lectin assessed by equilibrium sedimentation and crystallographic analysis of recombinant mutants.
S.Zamora-Caballero, A.Pérez, L.Sanz, J.Bravo, J.J.Calvete.
 
  ABSTRACT  
 
The structural basis of the pH dependency of the dimer-tetramer transition exhibited by Brinda's type II Diocleinae lectins was investigated by equilibrium sedimentation and X-ray crystal structure determination of recombinant wild-type and site-directed single and double mutants of the pH-stable tetrameric Dioclea grandiflora lectin (r-αDGL). Releasing the peripheral site interdimeric contact between R60 and D78 rendered a mutant displaying dimer-tetramer equilibrium in the pH range equivalent to pKa±1 of the γ-COOH. Mutation of both histidines 51 and 131, but not the mutation of each His separately, abolished the formation of the Diocleinae canonical tetramer in the pH range 2.5-8.5. The X-ray structure of the double mutant r-αDGL H51G/H131N suggests that H131 plays a crucial role in networking loop 114-125 residues from all four subunits at the central cavity of the tetrameric lectin, and that H51 maintains the central cavity loops in a proper spatial orientation to make H131-mediated interdimer contacts.
 

 

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